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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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415 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A3GALT2
ENSSSCG00000032224
ENSG00000184389
Alpha 1,3-galactosyltransferase 2
Tissue enhanced
Detected in some
ovary:
3.8
ABI3BP
ENSSSCG00000011959
ENSG00000154175
ABI family member 3 binding protein
Group enriched
Detected in many
cartilage:
276.5
penis:
99.9
ABL1
ENSSSCG00000005706
ENSG00000097007
ABL proto-oncogene 1, non-receptor tyrosine kinase
Tissue enriched
Detected in all
cervix:
131.8
ACAN
ENSSSCG00000001832
ENSG00000157766
Aggrecan core protein precursor
Tissue enriched
Detected in some
cartilage:
237.3
ACKR3
ENSSSCG00000016322
ENSG00000144476
Atypical chemokine receptor 3
Tissue enhanced
Detected in all
cartilage:
106.7
ACOT9
ENSSSCG00000012172
ENSG00000123130
Acyl-CoA thioesterase 9
Low tissue specificity
Detected in all
ADAM12
ENSSSCG00000010746
ENSG00000148848
ADAM metallopeptidase domain 12
Tissue enhanced
Detected in many
ovary:
64.8
ADAM33
ENSSSCG00000007145
ENSG00000149451
ADAM metallopeptidase domain 33
Tissue enhanced
Detected in many
cervix:
43.8
mesothelial tissue:
42.3
ADAMTS14
ENSSSCG00000010272
ENSG00000138316
ADAM metallopeptidase with thrombospondin type 1 motif 14
Tissue enhanced
Detected in many
cornea:
22.4
ADAMTS8
ENSSSCG00000015249
ENSG00000134917
ADAM metallopeptidase with thrombospondin type 1 motif 8
Tissue enhanced
Detected in many
smooth muscle:
17.8
urinary bladder:
18.6
ADGRG2
ENSSSCG00000029756
ENSG00000173698
Adhesion G protein-coupled receptor G2
Tissue enriched
Detected in many
cartilage:
61.9
ADGRL2
ENSSSCG00000003761
ENSG00000117114
Adhesion G protein-coupled receptor L2
Low tissue specificity
Detected in all
ADIRF
ENSSSCG00000037918
ENSG00000148671
Adipogenesis regulatory factor
Group enriched
Detected in many
adipose tissue:
186.4
cornea:
417.2
penis:
193.0
AFAP1
ENSSSCG00000023907
ENSG00000196526
Actin filament-associated protein 1
Tissue enhanced
Detected in all
testis:
51.0
AFAP1L2
ENSSSCG00000010650
ENSG00000169129
Actin filament associated protein 1 like 2
Tissue enhanced
Detected in all
brain:
44.6
choroid plexus:
44.2
vagus nerve:
62.3
AHDC1
ENSSSCG00000003579
ENSG00000126705
AT-hook DNA binding motif containing 1
Low tissue specificity
Detected in all
ALX1
ENSSSCG00000036744
ENSG00000180318
ALX homeobox 1
Tissue enhanced
Detected in many
kidney:
16.7
upper respiratory system:
8.8
ALX3
ENSSSCG00000006812
ENSG00000156150
ALX homeobox 3
Tissue enhanced
Detected in many
mesothelial tissue:
16.1
penis:
41.2
ALX4
ENSSSCG00000040329
ENSG00000052850
ALX homeobox 4
Tissue enhanced
Detected in many
brain:
18.4
dura mater:
15.6
penis:
14.9
upper respiratory system:
13.5
AMOTL1
ENSSSCG00000014960
ENSG00000166025
Angiomotin like 1
Tissue enhanced
Detected in all
male glands:
93.3
AMOTL2
ENSSSCG00000011643
ENSG00000114019
Angiomotin like 2
Low tissue specificity
Detected in all
ANGPTL7
ENSSSCG00000003414
ENSG00000171819
Angiopoietin-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
147.3
vagus nerve:
43.5
ANTXR1
ENSSSCG00000008340
ENSG00000169604
Anthrax toxin receptor 1
Tissue enhanced
Detected in all
cervix:
100.2
AOC2
ENSSSCG00000017384
ENSG00000131480
Amine oxidase, copper containing 2
Tissue enriched
Detected in many
cartilage:
19.3
APBB2
ENSSSCG00000022168
ENSG00000163697
Amyloid beta precursor protein binding family B member 2
Tissue enhanced
Detected in all
kidney:
79.7
AQP10
ENSSSCG00000006551
ENSG00000143595
Aquaporin-10
Tissue enhanced
Detected in many
cartilage:
9.6
ARHGEF10
ENSSSCG00000023419
ENSG00000104728
Rho guanine nucleotide exchange factor 10
Tissue enhanced
Detected in all
vagus nerve:
83.9
ARSI
ENSSSCG00000014448
ENSG00000183876
Arylsulfatase family member I
Tissue enriched
Detected in many
cartilage:
51.0
ASAP3
ENSSSCG00000028108
ENSG00000088280
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
Low tissue specificity
Detected in all
ASB9
ENSSSCG00000012132
ENSG00000102048
Ankyrin repeat and SOCS box protein 9
Tissue enhanced
Detected in many
cornea:
21.6
mouth:
21.9
ASPN
ENSSSCG00000008072
ENSG00000106819
Asporin precursor
Tissue enriched
Detected in all
dura mater:
89.1
ATP8B2
ENSSSCG00000006550
ENSG00000143515
ATPase phospholipid transporting 8B2
Tissue enhanced
Detected in all
cartilage:
45.8
AXL
ENSSSCG00000038806
ENSG00000167601
Tyrosine-protein kinase receptor UFO precursor
Low tissue specificity
Detected in all
BCL9
ENSSSCG00000006698
ENSG00000116128
B cell CLL/lymphoma 9
Low tissue specificity
Detected in all
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BICC1
ENSSSCG00000010204
ENSG00000122870
BicC family RNA binding protein 1
Tissue enhanced
Detected in all
mesothelial tissue:
46.6
BMPER
ENSSSCG00000016665
ENSG00000164619
BMP binding endothelial regulator
Tissue enhanced
Detected in many
cartilage:
59.5
BMPR1A
ENSSSCG00000010360
ENSG00000107779
Bone morphogenetic protein receptor type-1A precursor
Low tissue specificity
Detected in all
BOC
ENSSSCG00000025826
ENSG00000144857
BOC cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
46.5
BTBD19
ENSSSCG00000003926
ENSG00000222009
BTB domain containing 19
Low tissue specificity
Detected in all
C11orf95
ENSSSCG00000031666
ENSG00000188070
Chromosome 11 open reading frame 95
Low tissue specificity
Detected in all
C17orf113
ENSSSCG00000017417
ENSG00000267221
Chromosome 17 open reading frame 113
Tissue enhanced
Detected in many
cartilage:
15.0
stomach:
20.4
C1QTNF6
ENSSSCG00000030325
ENSG00000133466
Complement C1q tumor necrosis factor-related protein 6 precursor
Tissue enhanced
Detected in all
dura mater:
39.8
lens:
77.4
C1QTNF8
ENSSSCG00000032400
ENSG00000184471
C1q and TNF related 8
Tissue enriched
Detected in some
cartilage:
70.6
C2orf40
ENSSSCG00000037106
ENSG00000119147
Augurin precursor
Group enriched
Detected in many
cartilage:
221.4
choroid plexus:
64.2
CAPN6
ENSSSCG00000012584
ENSG00000077274
Calpain 6
Tissue enriched
Detected in many
cartilage:
177.0
CASKIN2
ENSSSCG00000040578
ENSG00000177303
CASK interacting protein 2
Tissue enhanced
Detected in all
vagus nerve:
77.2
CAV1
ENSSSCG00000016634
ENSG00000105974
Caveolin-1 isoform a
Tissue enhanced
Detected in many
penis:
98.1
CAV2
ENSSSCG00000016635
ENSG00000105971
Caveolin-2
Low tissue specificity
Detected in many
CCDC3
ENSSSCG00000011110
ENSG00000151468
Coiled-coil domain containing 3
Tissue enhanced
Detected in many
mesothelial tissue:
62.2
upper respiratory system:
64.7
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